The type of consortia of beneficial rhizospheric bacteria changes with soil nutritional status and agro-climatic datasets

A group from Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C, PIEAS), Punjab, Pakistan, etc. has reported that the type of consortia of beneficial rhizospheric bacteria changes with soil nutritional status and agro-climatic datasets https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9878846/ Despite the great significance of biostimulants in sustainable agriculture, there is still a lack of integrated technology encompassing the successful competitiveness of inoculated phosphate-solubilizing bacteria (PSB) in agricultural systems in the context of climatic conditions/meteorological factors and soil nutritional status. Bacterial strains used in this study are a subset of a large collection of PSB isolated from the rhizosphere soil of wheat grown in different agro-ecological zones of Pakistan. All of the strains used in the present study have multiple plant growth-promoting attributes, i.e., phosphate solubilization, zinc solubilization, indole acetic acid production, and organic acid production. Three different consortia were designed by selecting soil-/site-specific PSB for recommended wheat varieties to that particular site. Consortium-1, Enterobacter spp. ZW32, Ochrobactrum sp. SSR, and Enterobacter spp. ZW9. Consortium-2, Enterobacter spp. D1, Ochrobactrum sp. SSR, and Pantoea sp. S1 Consortium-3, Bacillus sp. TAYB, Ochrobactrum sp. SSR, and Pseudomonas sp. TJA Interestingly, soil-specific consortia improved various wheat growth parameters under respective soil conditions. For instance, the maximum grain yield (5,390 kg ha-1) was observed as a result of consortium-1 inoculation at site 2 followed by site 3 (5,240 kg ha-1) and site 1 (4,806 kg ha-1), and in the case of consortium-2, the maximum grain yield (5,324 kg ha-1) was observed as a result of consortium-2 inoculation at site 6 followed by site 5 (4,806 kg ha-1). The effect of consortium-3 was not so significant compared with consortium-1 and -2. However, the effect is clearly shown compared to the state with 20% less fertilizer. This study demonstrates for the first time the need to integrate soil biological health and agro-climatic conditions for consistent performance of augmented PSB and enhanced P nutrient uptake to reduce soil pollution caused by the extensive use of agrochemicals.

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Glycan modification is different spatiotemporaly in cardiac tissues

A group from Research Team for Geriatric Medicine (Vascular Medicine), Tokyo Metropolitan Institute of Gerontology, Tokyo, Japan. etc. has reported about spatiotemporal changes of tissue glycans depending on localization in cardiac aging. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9841240/ To investigate the characteristics of glycans in mouse cardiac tissues, eight parts of the short-axis slices from normal female mouse hearts, including the left ventricular wall (ventral sides and dorsal sides), the papillary muscle, and the ventricular septum were analyzed for three age groups (2 months, 12–14 months, and 23–25 months) using the lectin microarray. The glycan profiles of the eight areas of the hearts of 2-month-old mice were analyzed in detail using PCA. Interestingly, it was fond that glycan profiles differ in each region of the cardiac tissue. For instance, papillary muscle and ventricular septum were characterized by sialic acid residues, and ventral left ventricular wall were characterized by O-glycan residues and large-branched and asialo N-glycan residues. It was also found that sialic acid resides decreases with aging, although the rate of change varied from area to area.

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Feasibility of brewer’s spent yeast (BSY) microcapsules as a targeted oral drug delivery system

A group from REQUIMTE-LAQV, Department of Chemistry, University of Aveiro, Portugal, etc. has reported about feasibility of brewer’s spent yeast (BSY) microcapsules as a targeted oral drug delivery system. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9857821/ The BSY microcapsules were extracted by an alkaline extraction method with 1 M KOH or 4 M KOH or using a subcritical Water Extraction (SWE) method at 180℃ or 200℃. Resultant microcapsules were in vitro digested (IVD) with mimicking a gastrointestinal digestive condition. The non-digested material, despite some visible agglutination and deformation of the microcapsules, preserved their spherical shape and was enriched in (β1→3)-glucans. The soluble polysaccharides released during IVD from microcapsules obtained by SWE interact with Dectin-1, those released from the 1 M KOH microcapsules interact with DC-SIGN, and 4 M KOH and 180℃SWE microcapsules solubilized polysaccharides interact with Dectin-2. These results show the potential of BSY microcapsules to be used as an oral drug delivery system for biomedical applications.

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Changes in glycosylation of B cells and T cells in systemic lupus erythematosus patients

A group from Departamento de Medicina y Zootecnia de Cerdos, Universidad Nacional Autónoma de México, Ciudad de México, Mexico, etc. has reported about changes in glycosylation of B cells and T cells in systemic lupus erythematosus (SLE) patients. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9820943/ Systemic lupus erythematosus (SLE) is an autoimmune disease that can affect every organ and system in the body. In the case of B cells, glycosylation studies have been directed primarily at immunoglobulins. SLE patients have alterations in the glycosylation of immunoglobulin G. A greater recognition of the AAL lectin, which has an affinity for fucosylated residues, has been observed in comparison with healthy individuals. Increased recognition of the LCA lectin, which is specific for the core fucosylated trimannose N-glycan, towards immunoglobulin G has been also reported in SLE patients. Using ultra-resolution liquid chromatography, it was also found that they present a decrease in IgG galactosylation and sialylation. It has been shown that T cells from SLE patients present alterations in O-glycosylation using the ALL lectin, which recognizes core 1 in coactivating T cell receptors. T cells from patients with active SLE had less recognition by ALL than those with inactive SLE, and expression of receptors recognized by ALL was inversely correlated with disease activity. Another study reported increased expression of Tn antigen-type O-glycans in T cells from SLE patients using VVA lectin. A decrease in O-GlcNAcylation and phosphorylation of E74-like factor 1 (ELF-1) has been observed in SLE patients.

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Characterization of N-glycoproteins from human tear films

A group from Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany has reported about characterization of N-glycoproteins from human tear films. https://pubmed.ncbi.nlm.nih.gov/36677706/ The main objective of this study was to develop a lectin-based affinity purification method for the enrichment of glycoproteins/glycopeptides from human tear film and the MS-based detection as well as localization of their specific N-glycosylation sites. The best-performing multi-lectin column system (comprising the four lectins ConA, JAC, WGA, and UEA I, termed 4L) was applied to glycopeptide enrichment from human tear sample digests. As the main result, a total of 26 N glycosylation sites of 11 N-glycoproteins (LIF, PIGR, IGHA2, IGHA1, AZGP1, LACRT, JCHAIN, PIP, TF, HP, and SERPINA1) was identified in the tear sample pools of healthy individuals. This result will serve as an important N-glycoprotein reference map for future studies focusing on the ocular surface and will help to unravel the complex regulatory functions of N-glycoproteins in maintaining tear film stability and the ocular defense system.

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Characterization of Rotavirus A isolated from bat and rodent hosts

A group from Division of Molecular Pathobiology, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan, etc. has reported about isolation and characterization of distinct Rotavirus A (RVA) in bat and rodent hosts. https://pubmed.ncbi.nlm.nih.gov/36633410/ Here, RVA was isolated from Egyptian fruit bat and Natal multimammate mouse collected in Zambia (representative strains: 16-06 and MpR12). The RVA genome consists of 11 dsRNA segments, each encoding 6 structural viral proteins (VPs) and 5 or 6 nonstructural proteins (NSPs). RVA has a nonenveloped, triple-layered virion, with the outer capsid layer consisting of the spike protein VP4 and the glycoprotein VP7. It was found that 16-06 entered cells by binding to sialic acids on the cell surface, while MpR12 entered in a sialic acid-independent manner. Notably, glycan-binding analysis suggested that 16-06 recognizes both human and animal-type sialic acid, NeuAc and NeuGc.

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Rice phyllosphere microbiome: Differences in microbial communities between wild and cultivated rice

A group from State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China, etc., has reported about differences in microbial communities between wild and cultivated Rice. https://pubmed.ncbi.nlm.nih.gov/36625666/ The core rice phyllosphere bacteria contained 27 Proteobacteria that made up 62.8% of relative abundance, and Pantoea was the most abundant genus (42.7%), followed by Methylobacterium (4.8%), Pseudomonas (3.6%), Acinetobacter (2.9%), and Serratia (2.1%). Except for Proteobacteria, Actinobacteriota (11.7%), Firmicutes (8.5%), and Bacteroidota (0.5%) were the abundant phyla of the core phyllosphere bacteria. As for fungi, 29 core fungal ASVs were mainly classified in the genera of Nigrospora (13.2%), Pyrenophora (13.1%), Papiliotrema (12.5%), and Phaeosphaeria (4.5%). Although the core taxa were present in all the samples, the relative abundance of these ASVs varied significantly across rice species and sampling sites. For bacteria, Xanthomonas, Klebsiella and Sphingomonas were mostly enriched in the wild rice. Meanwhile, there were some core bacteria significantly enriched in the wild rice, such as Methylobacterium, Xanthomonas, Hymenobacter, and Klebsiella. Compared to the cultivated rice, Methylobacterium was the most enriched genus in wild rice. For fungi, Khuskia, Acidomyces, and Pyrenophora were mostly enriched in the wild rice, while none of core fungal taxa were enriched in the wild rice. Compared to the wild rice, Pseudomonas and Comamonas were the main enriched bacterial genera in the cultivated rice, and Chaetomium, and Rhodotorula were the main enriched fungal genera in the cultivated rice, respectively. From a view point of functional profiles of the rice phyllosphere microbiome, significantly higher functional potentials of methanol oxidation (+594%), methylotrophy (+460%), ureolysis (+430%), and photoheterotrophy (+345%) were expected in wild rice than in cultivated rice (P < 0.05) (Fig. S5C). In addition, cultivated rice had significantly higher potentials of plant pathogens (+91%), human-associated (+88%) and human pathogens (+88%).

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Burkholderia oklahomensis agglutinin (BOA) lectin effectively inhibits various variants of concern of SARS-CoV-2

A group from Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh PA, USA, etc. has reported about Burkholderia oklahomensis agglutinin (BOA) lectin which could effectively inhibit SARS-CoV-2 infection. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9810211/ It was shown that BOA lectin could effectively inhibit various variants of concern (VOC) of SARS-CoV-2 as shown below (EC50 for VOCs of SARS-CoV-2). It is known that VOCs of SARS-CoV-2 possess minimal changes with respect glycosylation. Probably with this reason and since BOA binds glycans on multiple Spike proteins, possibly crosslinking different Spike proteins on a single virion or crosslinking Spike proteins on different virions, BOA lectin could inhibit various VOCs of SARS-CoV-2 infection effectively. Actually, BOA contains two domains and therefore four glycan binding sites, and makes interviron and intraviron crosslinkings as show below.

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Sialidase activity of intestinal bacterial is related to severity of acute colitis in mice

A group from Institute of Physiology, University of Zurich, Zurich, Switzerland, etc. has reported that increase of intestinal bacterial sialidase activity exacerbates acute colitis in mice. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9780602/ The gut microbiota mainly consists of the phyla Bacteroidetes and Firmicutes, while members of Actinobacteria, Verrucomicrobia, Fusobacteria and Proteobacteria represent a minor fraction. The gut microbiota plays a vital role in human health, supplying essential nutrients, training the immune system, and helping to protect against pathogens. The gut microbiota is also involved in the host metabolism and has been linked to a variety of chronic diseases. Gut microbes express a multitude of genes, including a vast group of carbohydrate-active enzymes, which are required to digest complex oligo- and polysaccharides. In addition to digesting dietary carbohydrates, these enzymes are also active on the thick mucus layer lining intestinal surfaces. The cleavage of host glycans by bacterial GHs may also alter carbohydrate structures involved in cell adhesion, trafficking and activation. Especially fucosylated and sialylated epitopes are recognized by endogenous lectins, such as selectins and siglec, which regulate leukocyte trafficking and activation, respectively. To investigate the impact of bacterial glycoside hydrolase activities on the gut microbial composition and on host glycans during colon inflammation, local glycoside hydrolase activity was promoted by supplementing mice developed acute colitis with recombinant E. coli expressing specific sialidase, fucosidase and rhamnosidase enzymes. Interestingly, whereas increased fucosidase and rhamnosidase activity did not alter the course of colitis, increased sialidase activity exacerbated disease severity. Of note, the microbial composition of mice gavaged with recombinant E. coli expressing specific sialidase, fucosidase and rhamnosidase enzymes had little changes in the gut microbiota composition. On the other hand, it was found that the sialic acid on mucosal glycans and also on resident leukocytes in the colon mucosa was cleaved from PNA stainning and siglec ligand staining experiments. PNA staining in proximal colon As a conclusion, the remodeling of surface sialylation caused by increased sialidase activity could account for the observed exacerbation of acute colitis in mice due to down-regulate activation of immune cells.

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Changes in glycan patterns in the medial prefrontal cortex of autism spectrum disorders (ASD) rats

A group from College of Life Sciences, Shaanxi Normal University, Xi’an, Shaanxi, China, etc, has reported about changes in glycan patterns and glycan-related genes in the medial prefrontal cortex of autism spectrum disorders (ASD) rats. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9772556/ With using lectin microarrays, the following changes in glycosylation were found in ASD rats. (1) Branched high-mannose (recognized by ConA) was upregurated in ASD rats, (2) complex-type antennary agalacto N-glycan (recognized by GSL-II and PHA-E) was up-regulated in ASD rats, and (3) Siaα2-3 Gal/GalNAc (recognized by WGA and MAL-I) and terminal GalNAc structure (recognized by BPL and VVA) were down-regulated in ASD rats.

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